Welcome to ScopeCell 1.0!

Upload your SCP data for the following analyses via multiple SCP tools and visualization methods. Click here for our pre-processed SCP datasets.

The following analyses are provided :

Umap

Heatmap

Volcano

Bar

Box

Pseudotime

PAGA

velocity

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A comparison of processing time (in seconds) among different cell clustering approaches :

Tips: We keep your results for 7 days. If you have questions, contact us with your task id.

Upload your SCPP data for analyzing and visualizing protein patterns in a spatial context via Squidpy and various comprehensive visualization approaches. Click here for our pre-processed SCPP datasets.

Visualization Examples

Cell type distribution

Protein Expression

Neighborhood Enrichment

Cell Type Spatial Proximity

Spatial Autocorrelation

Ripley's L Function

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Tips: We keep your results for 7 days. If you have questions, contact us with your task id.

We have pre-processed several SCP and SCPP datasets from different studies as example data for users to upload and analyse using ScopeCell .

Dataset

Experiment Example1

Experiment Example2

Experiment Example3

We have provided a brief introduction to the single-cell proteomics analysis methods involved, and you can also find more information about them via hyperlinks.

Should you have any questions or suggestions about ScopeCell, please contact us via the following email or our contact form .